Ok, I have fixed all the issues. I had to disable the date in the top menu. It was what forced the slider and topics to the right and the right sidebar down.
Also, for the custom logo, I can’t use the URL from the media images in the template. I have to use a url from web images.
The images for each post was just me missing a few check boxes :-).
Thanks for all the support posts that helped me fix these. I hope this helps someone with similar support issues.